Vol. 3 No. 1 (2016)

Published: 2016-02-10

Editorial

About This Issue

Svetoslav Markov
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The Conference Biomath 2016

Roumen Anguelov, Svetoslav Markov
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Articles

Using Rapid Kinetics and Molecular Dynamics Simulations to Study Biomolecular Information Processing and Design

Evelina Ines De Laurentiis, Dylan Girodat, Evan Mercier, Hans-Joachim Wieden
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Kinetics of Drop Breakage and Drop-Drop Coalescence in Turbulent Flow

Slavka Tcholakova, Nadya Politova, Nikolai Denkov
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Roumen Tsanev Plenary Lecture

Kinetics of Drop Breakage and Drop-Drop Coalescence in Turbulent Flow

Slavka Tcholakova*, Nadia Politova, Nikolai Denkov
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Conference Keynote Presentations

On Renewal Equations in Population Biology

Odo Diekmann
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Modelling interactions between Plants and Bioagressors. Mathematical perspectives.

Yves Dumont
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Alternative Representations of Ecosystem Models

Caner Kazanci
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Topological Analysis of Pattern-Forming Systems

Patrick Shipman
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Using Rapid Kinetics and Molecular Dynamics Simulations to Study Biomolecular Information Processing and Design.

Evelina Ines De Laurentiis, Dylan Girodat, Evan Mercier, Hans Joachim Wieden*
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Conference Contributions

Nonlinear Age-Structured Models of Polycyclic Population Dynamics with Density Dependent Death Rate

Vitalii Akimenko
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Set-Valued Approximations of Sets in Rn

Roumen Anguelov
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Comparative Processing of Enzyme Kinetic Data by Henri and Michaelis-Menten Equations

Venko Beschkov
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Mathematical Analysis and Numerical Simulations of a Functional Differential Model of a Biological Digestion Process

Milen Kolev Borisov*, Neli Dimitrova, Mikhail Krastanov
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Wastewater Bioremediation using White Rot Fungi: Validation of a Dynamical System

Iulia Martina Bulai*, Federica Spina, Giovanna Cristina Varese, Ezio Venturino
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The evolution of handedness: Why are ant colonies left- and right-handed?

Paul Richard Thomas Calcraft*, Adrian T. Bell, Phil Husbands, Andrew Philippides, Jeremy E. Niven
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On the Spread of Rabies in Humans and Dogs

Michael Chapwanya*, Yibeltal Terefe, Jean Lubuma
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Stabilizing Role of Harvesting on a Chaotic Intraguild Predation Model

Juancho A. Collera*, Jhunas Paul T. Viernes, Julius Fergy T. Rabago
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20D-dynamic Representation of Protein Sequences

Agata Czerniecka*, Dorota Bielińska-Wąż, Piotr Wąż
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An Optimal Control Problem Related to a Hybrid Aquatic System

Gabriel Dimitriu*, Catalin Trenchea
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Multiple Solutions for a Nonlinear Discrete Fourth Order p-Laplacian Equation

Nikolay Dimitrov
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Improving Insect-Pest Management via Mating Disruption and Trapping Models

Roumen Anguelov, Claire Dufourd*, Yves Dumont
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Backward Bifurcation Analysis for A Malaria Transmission Model

Roumen Anguelov, Kenneth Njengele Dukuza*, Jean Lubuma
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HPC Biomedical Simulations Based on CT Data

Ivan Georgiev
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Domain Configuration Defines the Thermodynamic Landscape of Elongation Factor Tu Nucleotide Binding

Dylan Joseph Girodat*, Evan Mercier, Katehrine Gzyl, Hans-Joachim Wieden
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The V-Line Radon Transform and its Biomedical Imaging Applications.

Rim Gouia-Zarrad
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Numerical Solutions of One-Dimensional Parabolic Convection-Diffusion Problems Arising in Biology by the Laguerre Collocation Method

Burcu Gürbüz*, Mehmet Sezer
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Efficient Geometric Numerical Methods for Solving Differential Systems

A. Abdi, Gholamreza Hojjati*, M. Hosseini Nasab
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Sparse Canonical Correlation Analyses of Multimodal Omics Data

Kejun He, Xiaoning Qian, Jianhua Huang, Sharon M. Donovan, Robert S. Chapkin, Ivan Ivanov*
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Mathematical Models with Generic Birth and Death Rates in Population Dynamics

Tihomir Ivanov*, Neli Dimitrova
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Stability Analysis of a Fractional Order Food Chain Model

Mohammad Javidi
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Nestor Marcoff Contribution to Bulgarian Physical and Mathematical Education (1836 – 1916)

Ganka Kamisheva
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A Model for Tuberculosis with Endogenous Reactivation and Exogenous ReinfectionA Model for Tuberculosis with Endogenous Reactivation and Exogenous Reinfection

Azizeh Jabbari, Hossein Kheiri*
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Analysis of Some Features of the Immunological System

Mikhail Kolev
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Mathematical Models Of Torque-Velocity Relation

Gergana Lyubomirova Koroleova*, Nevena Pencheva, Peter Milanov, Stefan Stefanov
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Stability of Solitary Waves in Biomembranes and Nerves

Nikolai Kutev*, Natalia Kolkovska, Milena Dimova
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Adjoint Sensitivity Analysis of a Spatial Tumor Growth Model with Strong Allee Effect

Krzysztof Łakomiec*, Krzysztof Fujarewicz
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Noncentral P'olya-Aeppli Distribution

Meglena Delcheva Lazarova*, Leda Dimitrova Minkova
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A Three-dimensional Computational Model to Investigate the Influence of Spatial Heterogeneity on the Antibiotic Tolerance of Bacterial Biofilms

Lakshmi Machineni*, Parag D. Pawar
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Free-energy Landscape of Magainin Monomer Variants in Water Solution: a Well-tempered Metadynamics Study

Rositsa Marinova*, Peicho Petkov, Valeri Kochev, Nevena Ilieva, Elena Lilkova, Leander Litov
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Building Reaction Kinetic Models for Amiloid Fibril Growth

Svetoslav Marinov Markov
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A Comprehensive Compartmental Model for the Assessment of Net Whole Body Protein Breakdown, Using a Pulse of Phenylalanine and Tyrosine Stable Isotopes in Humans

Alvise Mason*, Marielle PKJ Engelen, Gianna Toffolo, Ivan Ivanov, Nicolaas EP Deutz
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Comparison and Assessment of Commonly Used Model Selection Criteria in Modeling of Experimental Data

Radoslav Mavrevski*, Peter Milanov, Borislav Yurukov
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Quantitative Analysis and Mathematical Models of a Partial Agonism

Peter Milanov*, Nevena Pencheva, Fatima Sapundzhi
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Efficient Numerical Methods for Solving Large Henri-Michaelis-Menten Systems

John J H Miller
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A Mathematical Model for the Propagation of an Animal Species on a Plain

Joel Nimyel Ndam*, S. Dung
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3D Model and Main Geomeric and Mass-inertial Characteristics of the Bulgarian Man

Gergana Nikolova
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Cholera Transmission Dynamics between Communities Linked by Migration

John Boscoh Hatson Njagarah*, Farai Nyabadza
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A Model-based Analysis of Glycolytic Oscillations and Electrical Activity in Pancreatic Alpha-cells

Edgar Olivos Santes*, Hugo E. Romero C., Genevieve Dupont, Virginia Gonzalez-Velez
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Reading the Antibody Repertoires

Dilyan Ferdinandov, Victor Kostov, Assen Bussarsky, Anastas D. Pashov*
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Electrical Properties of Blood in Patients with Type 2 Diabetes Рњellitus

Vasilka Paskova*, Nadia Antonova, Nino Chaushev, Irena Velcheva, Ivan Ivanov
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The Biomechanical Relevance of the Mathematical Models of Torque-Angle and Torque-Velocity Relationships

Nevena Pencheva*, Gergana Koroleova, Iliya kanelov, Peter Milanov
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On the single-lane TASEP with generalized update and open boundary conditions

Nina Christova Pesheva*, Nadezhda Bunzarova, Jordan Brankov, Vyatcheslav Priezzhev
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Mathematical Model of the First Stage of Adaptation of Acidithiobacillus ferrooxidans JCM 3863 to High Substrate Concentrations in Batch

Plamena Zlateva, Elitsa Petrova*
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Discontinuous Galerkin Solver for the Unsteady Advection-Reaction-Diffusion Equation. Applications to the Simulation and Parameter Identification of a Root Growth Model

Yves Dumont, Thierry Fourcaud, Emilie Peynaud*
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The Babesiosis Disease in Bovine and Tick Populations Model and its Global Analysis

Hossein Pourbashash*, Hossein Kheiri
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Hormesis Arising in a Simple Enzyme Kinetic Model

Peter Rashkov
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Characterizations of a Quaternionic Surface in Minkowski 3-Space

Muhammed Talat Sarıaydın*, Vedat Asil, Talat Korpinar
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Bioinformatics Measurements with High Performance Computing

Anton Stoilov*, Borislav Yurukov
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Advection Induced Patterns in the Brusselator Model

Roumen Anguelov, Stephanus Marnus Stoltz*
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Interactions of Pulsed Fires and Water in Tree--Grass Savanna Ecosystems

Alexis Tchuinte Tamen*, Yves Dumont, Samuel Bowong, Jean-Jules Tewa, Pierre Couteron
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Model Phytoplankton Population by Branching processes

Antoanela Terzieva
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On the Homogenization of a Diffusion Problem with Flux Jump

Renata Bunoiu, Claudia Timofte*
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Protein Folding Prediction in 3D Cubic Lattice in HP Model

Metodi Traykov*, Ivan Trenchev, Peter Milanov
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The Influence of the Magnetic Field on the DNA

Ivan Trenchev*, Metodi Traykov, Mitko Georgiev
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A Biologically-Motivated Synchronization Problem in Cellular Automata

Hiroshi Umeo
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Mathematical and Statistical Analysis of the Interactions between Tumor Cells and Cells of the Immune System

Gergana Venkova Velikova
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Modified Genetic Algorithm to Traveling Salesman Problem for Large Input Datasets

Vladimir Vladimirov*, Fatima Sapundzhi, Radoslava Kraleva, Velin Kralev
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Assessment of Different Approaches to Model and Simulate Supraventricular Tachycardias

Clemens Zeile*, Sebastian Sager, Eberhard Scholz
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